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Initial response of fish trophic niche to hydrological alteration in the upstream of Three Gorges Dam



Damming is one of the dramatic impacts to river food webs due to habitat fragmentation and changes in the hydrological regimes. The world’s largest dam, the Three Gorges Dam (TGD), has been constructed in the middle of Yangtze River since 2003. The objective of this study was to understand the effects of altered hydrological regime on the trophic structure of fish food web along the hydrological gradient in the TGD.


Fish samples were collected from an upstream, a midstream and a downstream site of the Yangtze River upstream of the TGD in May and September of 2004. Muscle tissue of each fish species was determined for stable isotopic compositions (δ13C and δ15N) which were used to calculate isotope-based Bayesian community-wide trophic metrics.


Stable isotope trophic niche analysis reveals reduced utilization of basal resource and trophic niche space at the midstream and downstream sites. By contrast, community trophic diversity and species redundancy were higher at the downstream than the upstream and midstream, likely as the result of reduced the spectrum of basal resources. These findings suggested that the negative impacts on the overall trophic niche space from reduced flow, increased water depth and stagnancy occurred only one year after the completion of the TGD.


Altered hydrological regimes posed multiple impacts to the aquatic food web. Reduced flow and increased water depth within TGD has posed initial effects to the fish community trophic structure. Further collections ana analysis of ecological data to compare the fish trophic structure revealed in this study are needed to assess the long-term impacts of TGD on fish community structure and resources utilization.


River damming is a dramatic anthropogenic factor affecting freshwater environments (Dynesius & Nilsson 1994; Xu et al. 2013). Damming leads to habitat fragmentation, changes in water depth, alter the rates, seasonal timing, and durations of flow. These changes may in turn affect the physical, chemical, and biological features of the river systems (Sternberg 2006; Dudgeon 2011). Numerous studies on the negative impacts of damming to the river ecosystem have been reported around the world although damming may provide other benefits to the human societies (Finer and Jenkins 2012; McClain 2013).

The construction of the Three Gorges Dam (TGD) at the middle of Yangtze River in south-central China would also have a series of environmental consequences (Wu et al. 2003; Fu et al. 2003; Xu et al. 2013). Since TGD started storing water in late 2003, the water depth increased by 66 m. The formerly narrow channel with torrential water flow has been converted to extensive stagnant water similar to the limnetic zone of a large lake system as increases in the water depth, alternations of hydrology, and other physical, chemical, and biological characteristics of Three Gorges Reservoir (TGR) and the downstream (Liu and Cao 1992; Salazar 2000; Wu et al. 2003; Xu et al. 2013).

The Yangtze River has high diversity for freshwater fish species (Xie 2003). The changes in the ecological environment have been reported to affect the fish community of TGR and the downstream waters (Fu et al. 2003; Xie 2003; Chen et al. 2009). Gao et al. (2010) reported the impacts of TGD to the fish community structure such as shift of fish species from lotic to lentic dominance. Chen et al. (2011) reported changes in fish assemblages following the completion of TGD. Other studies focused on the reproduction of major commercially important fish such as the major Chinese carp (Zhang et al. 2012; Hu et al. 2014) or endangered species (Chen et al. 2011; Zhang et al. 2014) while some studies focused on heavy metal accumulation (Cai et al. 2012; Yi and Zhang 2012) or conservation biology (Zhang et al. 2014; Ye et al. 2014). There is a severe lack of research work on trophic ecology of fish related to the TGD construction. Zhang et al. (2007) reported the suspended organic matter as the major sources of a planktivorous fish in Yangtze River. Wang et al. (2014) analyzed carbon sources for select invertebrates and fish at three river sites upstream of the TGD.

Stable isotope analysis has become a powerful tool for the study of aquatic food web (Kling et al. 1992; Vander Zanden 2001). Early stable isotope studies on fish community were focused on dietary sources, feeding relationships, and trophic levels (Cabana and Rasmussen 1996; Gu et al. 1996; Pinnegar and Polunin 2000). Recently, stable isotope data from aquatic consumers have been used to conduct trophic niche analysis (Bearhop et al. 2004; Newsome et al. 2012). Layman et al. (2007) proposed six community-wide trophic metrics based on fish assemblages. The six niche metrics are measures of the total extent of spacing and trophic redundancy within a δ13C and δ15N bi-plot. This approach is considered as a more in-depth utility of stable isotope data for the analysis of consumer’s trophic niche. Jackson et al. (2011) proposed a Bayesian framework to standardize the calculation of these trophic niche metrics, which has been applied to several studies of terrestrial (Perkins et al. 2014) and aquatic trophic niches (Jackson et al. 2011; Abrantes et al. 2014).

We analyzed the stable carbon (δ13C) and nitrogen (δ15N) isotopic compositions of fish and invertebrates in three sites with different hydrological regimes located in the upstream of the TGD. Since damming of rivers is the most dramatic anthropogenic factor affecting freshwater environments (Dynesius and Nilsson 1994; Dudgeon, 2000; 2011), the construction of the TGD would also have severe environmental consequences (Park et al. 2003: Dudgeon 2011). The main objective of this study was to compare the stable isotope niches and the fish trophic positions of the fish collected in the three study sites of Yangtze River. Information from this study may assess the initial changes of hydrology and the resultant ecological changes which may affect fish community structure as the result of the TGD construction. Findings may provide important insights of the changes in fish trophic structure and will be useful for wildlife conservation and fisheries management of the TGD and dammed rivers in the world.


Description of study sites

The Yangtze River is the largest river in China and the third longest river in the world, with a length of 6300 km and a drainage basin of 1,808,500 km2 (Fig. 1). Tremendous periodic flood events occur in the summer with a dry period during the winter and spring. The Three Gorges Dam (TGD), which is the world’s largest dam, has been constructed in the middle Yangtze River in south-central China. As a result, the water depth upstream of the dam had increased by 66 m since the Three Gorges Reservoir (TGR) began storing water in late 2003. The formerly narrow channel characterized by torrential water flow has been converted to an extensive stagnant water body similar to the limnetic zone of a large lake system, with corresponding increases in the water depth, alternations of the flow rate, dissolved oxygen, light availability, and temperature in the TGR (Table 1).

Fig. 1
figure 1

Map of Three Gorges Reservoir area showing the three study sites and major cities

Table 1 Averages of selected environmental variables during the study period (2004–2005) at river sections near the three sampling sites along Yangtze River. Data are taken from Wang et al. (2014)

Sample collection and processing

Detail methods for sample collection and processing can be found in Wang et al. (2014). Briefly, all samples were collected in two trips to the study sites in September 2004 and May 2005 which represent the wet and dry periods, respectively. The validity of this study is first based on the assumption that equally effective sampling effort was placed and resulted in similar probability of harvesting a fish species across sites. This is valid because of the same fishing tools and similar time spent on each site. The middle Yangtze River hosted a high range of fish species, and our collection only reflected a portion of the common species present in this region.

Epiphytic algae were collected from substrate surface and rinsed repeatedly in deionized water to remove sediment particles and detritus. Particulate organic matter (POM) was collected from several depths with a water bottle along five cross-transects at each site. In the laboratory, water was passed through coarse (100 μm) sieves and then filtered onto precombusted Whatman GF/C (1.2 μm) glass fiber filters.

The invertebrates collected included zooplankton, snails, the stream crab (Sinopotamon yangtsekiense), and the river shrimp (Macrobranchium nipponense). Zooplankton were obtained from vertical hauls of a 100-μm plankton net from each of the five transects at each station. The snails, stream crabs, and river shrimp were hand-collected or captured with fish traps. Shells and gut contents were removed, and the individuals were rinsed with distilled water.

A total of 27 species of fish consisting of three to four individuals of each species (Appendix 1) were collected utilizing various fishing tools. For each fish captured, the total length was measured and recorded, and the dorsal white muscle tissue was removed and placed on ice in the field. In laboratory, all samples were dried at either 80 °C for 24 h (plant organic matter) or 60 °C for 48 h (consumers) and ground into fine power using a mortar and pestle, or an agate mill for vascular plant samples. All equipment were washed with ethanol and dried between samples.

Stable isotope analysis

The 13C/12C and 15N/14N ratios were determined using Thermo Finnigan MAT DELTAplus XP isotope-ratio mass spectrometers at the Stable Isotope Laboratory for Ecological and Environmental Research at the Research Center for Plant Ecology, Beijing Institute of Botany, the Chinese Academy of Sciences. The isotope ratio is expressed in the conventional delta (δ) notation, defined as the per mil (‰) deviation from the isotope standard, Peedee Belemnite (PDB) formation and atmospheric N2 for 13C/12C and 15N/14N, respectively. Routine precision for replicate samples was ± 0.1 ‰ for δ15N and ± 0.3 ‰ for δ13C.

Estimate of stable isotope enrichments between fish and diets

We investigated the diet compositions of yellow catfish (Pelteobagrus fulvidraco) and the Amur catfish (Silurus asotus) by gut content analysis. The food components were parted into terrestrial plants, plant debris, phytoplankton, benthic algae, zooplankton, shrimp, mollusk, and fish, and the proportion in bulk diet and their stable isotope values were measured for each of them (Table 2). The stable isotope values of bulk diets could be calculated as follow:

Table 2 The dietary compositions of P. fulvldraco and C. heterodon revealed by gut content analysis and the stable isotope signatures
$$ {\updelta}^{15}{\mathrm{N}}_{\mathrm{bulk}-\mathrm{diet}}={\displaystyle \sum {f}_i\times {\delta}^{15}{N}_i} $$

where δ15Nbulk-diet were the stable isotope values of fish; the subscript i represents one food source, f represents the fractional contribution of each food source to fish diets, and δ15N i represents the stable isotope values for each food source. The isotope enrichment (Δδ15N) between fish and their diets is calculated as follow:

$$ \Delta {\updelta}^{15}\mathrm{N}={\updelta}^{15}{\mathrm{N}}_{\mathrm{consumer}}-{\updelta}^{15}{\mathrm{N}}_{\mathrm{bulk}-\mathrm{diet}} $$

There is a general agreement in that δ15N increases by 2.8 to 3.8 ‰ per trophic level upward (Δδ15N) in freshwater systems (Minagawa and Wada 1984; Post 2002). We calculated the isotope fractionation factor (Δδ15N) from yellow catfish and the Amur catfish and their diets, and 15 N-enrichment per trophic level is about 3.1 ‰.

Data analysis

Site-specific stable isotope data from the two collection events were pooled prior to further data analysis. This is done because no significant differences in δ13C or δ15N of fish between the two sample events for each site were found (ANOVA, all p > 0.05). Trophic position (λ) of each fish species was calculated with following equation (Post 2002):

$$ \lambda = \left({\updelta}^{15}{\mathrm{N}}_{\mathrm{consumer}} - {\updelta}^{15}{\mathrm{N}}_{\mathrm{base}}\right)/\varDelta {\updelta}^{15}\mathrm{N} + 2 $$

where λ is trophic position of a species of fish. δ15Nconsumer is the average δ15N of the fish, δ15Nbase is the average δ15N of the baseline organism. We used average δ15N of grass carp (Ctenopharyngodon idellus) and Wuchang bream (Megalobrama amblycephala) which are true herbivores as the baseline. Δδ15N is the isotope enrichment factor. The trophic level of the consumers used to estimate the baseline is 2.

Six community-wide trophic metrics proposed by layman et al. (2007) were used to compare trophic niche between the study sites. The δ13C range (CR) is the difference between the species with the most enriched and most depleted δ13C ratio and is a measure of basal resource diversity. The δ15N range (NR) is the difference between the species with the most enriched and most depleted δ15N ratio and is a measure of trophic length within a food chain. The total area (TA) of the δ13C and δ15N bi-plot space (convex hull) describes the total space occupied by a community. The mean distance to the δ13C-δ15N centroid (CD) provides a measure of trophic diversity. The mean nearest neighbor distance (MNND) is the mean of the Euclidean distances to each species’ nearest neighbor in bi-plot space and thus a measure of the overall density of species packing. Small MNND suggests increased trophic redundancy. Finally, the standard deviation of nearest neighbor distance (SDNND) is a measure of the evenness of species packing in bi-plot space. Low SDNND values mean more even distribution of trophic niches. δ13C vs. δ15N biplots of each fish species in each site with standard ellipse areas (SEA) and convex hull (TA) were used to give the general figures for stable isotope distribution among sites. SEA was estimated using multivariate ellipse based metrics, which are bivariate equivalents to standard deviations in univariate analysis (Jackson et al. 2011). These analyses were performed using the R statistical computing packages (R Development Core Team, 2007).


Environmental variables and species composition of fish

Select hydrological, chemical, and biological variables from the three study sites are present in Table 1. The hydrological flow rate before the construction of the TGD was high across the study sites (Wang et al. 2014) but was greatly reduced after the completion of the dam to nearly stagnant at the downstream site. Nutrient (TP and TN) concentrations were high, indicating that all study sites were eutrophic, which is also supported by the moderately higher pH, DO, and COD and chlorophyll, a concentration in the midstream and downstream sites.

A total of 27 fish species were collected from the three study sites with species abundance highest at the upstream (22 species), moderate at downstream (14), and lowest at midstream (12). Chinese perch (Siniperca spp.) and largemouth bronze gudgeon (Coreius guichenoti) are on the national protected fish list which appear in all of the three study sites (Tables 35). However, ten species collected at the upstream site were not found at the midstream, and eight species were not found in the downstream sites and most of these fish are omnivores occupying the benthic habitat. The silver carp (Hypophthalmichthys molitrix) which is a planktivore living in the upper water column was collected at the midstream and downstream sites, but not at the upstream site. The longsout catfish (Leiocassis longirostris) and prenant’s schizothoracin (Schizothorax prenanti) were collected from the downstream site only.

Table 3 Average, standard deviation (SD) of δ13C, δ15N ratios, and trophic level for all consumer taxa at the upstream site (Luoqi) in Three Gorges Reservoir. Data were pooled from the wet and dry periods between 2004 and 2005
Table 4 Averages, standard deviation (SD) of δ13C and δ15N ratios for all consumer taxa at the midstream site (Huanghua) in Three Gorges Reservoir. Data were pooled from the wet and dry periods between 2004 and 2005
Table 5 Averages, standard deviation (SD) of δ13C and δ15N ratios for all consumer taxa at the upstream site (Maoping) in Three Gorges Reservoir. Data were pooled from the wet and dry periods between 2004 and 2005
Appendix 1 Name, common name, and trophic role for all fish taxa at the three study sites of the middle Yangtze River

Trophic level

The diets of P. fulvldraco and S. asotus were identified and analyzed for stable isotope composition along with their muscle tissue. The trophic fractionation factor (Δδ15N) from P. fulvldraco and S. asotus over their diets were 3.3 and 2.9 ‰, respectively, and the average (3.1 ‰) is used as the Δδ15N for the estimates of trophic position for each species. Although the Δδ15N values were based on the instant stomach content analysis and apparently did not consider seasonal variations in dietary composition, the average is similar to those reported previously (Post 2002).

The fish collected during this study may be classified into one of five general trophic guilds: herbivore, planktivore, omnivore, carninvore, and piscivore but were dominated by benthic omnivorous fish as other rivers. (Tables 3, 4, and 5). The trophic level of the fish assemblages at the three study sties ranged from 1.8 to 4.5 with an average of 2.7, 2.5, and 3.0 for the upstream, midstream, and downstream, respectively (Fig. 2). The grass carp and Chinese bream which appeared in all study sites were the only true herbivorous fish relying on large aquatic plants, and they are assigned as trophic level 2 fish. Silver carp which was only found in the midstream and downstream sites had a trophic level about 2, indicating that they relied on primary producers. Most other fish were omnivores, typically positioned between trophic levels of 2 and 3.5. Species which were collected from all study sites often tended to increase in trophic level from upstream to downstream. The high trophic level was especially apparent at the fish collected from the downstream site which were often 0.5 trophic level higher than the same species from the upstream site. Yellow catfish was a full trophic level higher than those from the upstream and midstream sites. However, the trophic level of Hemimzon sinensis at the downstream site was slightly lower than those form the other sites.

Fig. 2
figure 2

Dual isotope plots of fish by trophic roles and trophic levels (TL) at the three study sites

Food chain length defined as the highest trophic level of the fish from a habitat was 3.5 at the upstream, 3.4 at the midstream, and 4.0 at the downstream. Chinese perch was positioned at the highest TL at all study sites while the Redfin culter and the Amur catfish shared the same TL as the Chinese perch from the upstream and midstream site. The TL (3.9) of longsnout catfish which was only collected from the downstream site was slightly lower than the Chinese perch. Except for Amur catfish which preys on invertebrates and small fish, other three fish are largely piscivores.

Trophic niche structure

The Bayesian results of Layman trophic niche metrics were displayed in Fig. 3. The nitrogen range (NR) values were similar at upstream and downstream, but lower at the midstream. By contrast, carbon range (CR) was highest at the upstream and drastically reduced at the midstream and downstream sites. Similarly, the standard ellipse area (SEA) size was greatest at upstream and decreased considerably at midstream and downstream. The mean distance to the δ13C-δ15N centroid (CD) was nearly identical at both upstream and midstream and higher at downstream. Similar to CR and SEA, the mean nearest neighbor distance (MNND) and the standard deviation of nearest neighbor distance (SDNND) also displayed a trend of decreasing from upstream to downstream.

Fig. 3
figure 3

Bar plots of the six Layman’s niche metrics calculated using the Bayesian statistics based on resampling (n = 10,000) of uncertainty in sample mean estimates. Black dots represent means, and shaded boxes (dark to light) represent 50, 75, and 95 % credible intervals for mean estimates


Before the construction of the TGD, hydrology and fish assemblage at the three study sites was similar with high flow rates and fish diversity (Wang et al. 2014). A number of studies reported decreases in fish species after the completion of TGD (Gao et al. 2010; Liu et al. 2012). The alterations of physical (flow rate and pattern, and river stage) and biological habitat (dietary sources and abundance) are attributed to the changes in fish composition and abundance (Gao et al. 2010; Dudgeon 2011; Zhang et al. 2014). However, information on intrinsic trophic niche as a function of change of hydrological and biological regimes has not been reported. This study provided new and confirmative data for the illustration of the changes in fish ecology following hydrological alterations of dam construction.

Along with decreases in species diversity and appearance of the limnetic species, several major trophic niche metrics also pointed to the deterioration of the ecological niche at the downstream site since the completion of the TGD. Both δ15N range (NR) and mean TL were greater at the downstream site than at the upstream site. Furthermore, the food chain length was also greatest at the downstream site with the Chinese perch occupying the highest trophic levels. The about 0.5 food chain length longer at the downstream than at other sites is likely attributed to more dietary organisms with higher trophic positions available at the more eutrophic downstream (Table 1).

The δ13C range (CR) is a measure of basal resource diversity. Compared to the midstream and downstream sites, the high CR at the upstream site reflected higher degree of resource diversity and the utilization of these resources by similarly high diversity of the fish assemblage. The low CR at the midstream and downstream sites where hydrological flow rates were also dramatically reduced may be attributed to the decreases in natural resources. This view is supported by the δ13C enrichment and depletion in common carp and snakehead collected at the upstream, respectively, which is over 1 ‰ and over 2 ‰ greater or less than those at the midstream and downstream. This might suggest a 13C enriched and depleted basal resource, respectively, were absent at the lower reach of the river, likely as the result of decreasing availability of organic matter. The absence of snakehead with the most depleted δ13C at the midstream directly contributed to the small CR in this habitat. By contrast, Layman et al. (2007) showed that compared to pre-restored period, CR did not change because similar basal resources were present (Layman et al. 2005). Abrantes et al. (2014) also found trophic diversity in an African estuary increased as greater input of terrestrial organic matter during the wet period.

The niche space (SEA) is influenced by the end members of δ13C-δ15N for each consumer community. In this study, as discussed previously, the changes in SEA are mainly determined by CR which decreased considerably from upstream to downstream. The slight variation in NR from the upstream to downstream site does not affect the SEA as much as CR. Since the species which determined the trophic space basically appeared at all sites, we may conclude that it is resource availability which decreased along the river that affected fish trophic space of the community niche. This further supported findings from other measures in this study and other studies that alteration of hydrology impairs trophic niche in Yangtze and other lotic systems. The SEA is not affected by fish with intermediate δ13C-δ15N values so decreases in fish species diversity do not necessarily affect trophic space (Layman et al. 2007).

The mean distance to the δ13C-δ15N centroid (CD) provides a measure of average trophic diversity and is largely affected by the degree of species spacing (Layman et al. 2007). Although the trophic space (SEA) decreased from upstream to downstream, average trophic diversity (CD) increased from upstream to downstream, indicating that due to the absence of basal resources with extreme δ13C values, fish trophic spacing was more aggregated and fish shared more similar basal resources at the downstream. This is supported by the decreases in both NND and SDNND at the midstream and downstream sites where trophic distribution became more even and redundant within the reduced trophic space. Cooper and Wissel (2012) show that with species redundancy increased in more productive waters. Layman et al. (2007) but showed that NND and SDNND decreased as the result of similar trophic niches shared by new immigrant species post-restoration.


Our results on species abundance and composition and trophic niche characteristics pointed to the negative impacts of the construction of SGD on fish community structure and trophic spacing. This is done likely through reduced hydrological flow and increased water stagnancy which are unfavorable to fish adapted to lotic water before the dam construction. The slight increase in food chain length at the impacted or more productive site seems to be positive but severe loss of species diversity and trophic space also occurred. Our data were collected only 1 year after the completion of the TGD and can be viewed as the immediate impact, if any, by TGD. Data are being collected to assess the longer term effect of TGD on trophic niche and the contribution of basal resources to the fish assemblages at similar sites along the Middle Yangtze River.


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The authors are grateful to Leyi Li for his assistance in the stable isotopic measurements. The field and laboratory analyses were supported by two NSFCs (Grant Nos. 51179094 and 30700091) to J. Wang. Data analysis and manuscript preparation were supported by a NSFC (Grant No. 41376158) to B. Gu.

Authors’ contributions

JW, the first author, achieved field work and laboratory analyses and provided the financial support for this study. LL prepared the samples for the measurement and organized the data. JX re-analyzed the data by R statistical computing packages. BG, the corresponding author, reorganized the data and prepared and modified the manuscript. All authors read and approved the final manuscript.

Authors’ information

Jianzhu Wang, Ph. D./Associate professor/“151” backbone talents of China Three Gorges University (CTGU), graduated from Institute of Botany, the Chinese Academy of Science. His interests include stable isotopic ecology, restoration ecology, and pollution ecology. He had achieved two NSFCs as host and several national projects as a participator. He had published more than 20 papers in journals and achieved one first prize of provincial and ministerial level awards.

Competing interests

The authors declare that they have no competing interests.

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Correspondence to Binhe Gu.

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Wang, J., Li, L., Xu, J. et al. Initial response of fish trophic niche to hydrological alteration in the upstream of Three Gorges Dam. Ecol Process 5, 11 (2016).

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